We stopped by the Ghibli Museum in Mitaka outside of Tokyo. It's an awesome spot for fans of their movies. Unfortunately no photos allowed inside. In their cafe they even have their own beer!
Afterwards we hit an izakaya in Tokyo. Very big city feel to it so not an intimate place (it was huge with tons of corridors and private rooms) but still authentic. Lots of salary men and office ladies drinking, eating and smoking.
Ate at Ippudo Ramen in Tokyo. Chain restaurant but that's not a bad thing. Good broth and perfect soft boiled egg. Plus you can get extra noodles after you finish your first batch!